Analysis of observed S protein RBD mutations

Relevant link: Mutation Tracker for genome-wide analysis


MutationWorldwide observedBFE change (kcal/mol)*Antibody disruption
CountsRankValueRankCountsRatio(%)Rank
T478K205353110.9994321.54714
L452R199093920.5752393930.0143
N501Y93659630.5499422418.46235
S477N12638340.018049300.0800
E484K12570450.09463273829.23146
K417N10274660.16612095340.7796
E484A915317-0.01835524232.31127
G339D9085380.111729253.85552
S373P9070390.083535275.38457
Q493R90606100.12712673023.08195
S375F90589110.060939910.77782
Y505H9050412-0.20606984333.08123
Q498R9045913-0.09696512418.46231
S371F89534140.198917300.0795
N440K87781150.61613200.0815
D405N87209160.267312864.62513
T376A8711017-0.0016533107.69391
R408S86851180.10103134232.31126
K417T67533190.01165043728.46152
N439K19531200.1792191118.46371
E484Q8852210.00575133023.08193
R346K7814220.123427464.62507
F490S6928230.4406685139.23105
S494P6225240.09023386247.6978
G446V5514250.158321996.92422
A520S5080260.149523732.31618
L452Q3970270.980252720.77213
G446S3848280.004651953.85548
G496S3580290.01874912418.46236
S477I356530-0.000253021.54693
S371P3281310.08723471914.62276
A522S3251320.128326421.54695
A522V2825330.070537910.77767
Q414R2749340.070837775.38451
N501T2681350.4514631713.08299
P479S2610360.38448732.31619
A411S2401370.502355118.46378
R357K2307380.139325053.85547
V367L1964390.046542700.0818
P384L1919400.26811261813.85280
T385I1883410.031447021.54698
V367F1737420.176419300.0840
A475V1647430.3069115107.69390
V483F1631440.54284453.85544
Q414K1556450.123427532.31621
S459F1457460.49985600.0842
R408I1448470.19491742519.23227
L455F143648-0.04155812015.38269
N440S1389490.149923521.54700
D427N137650-0.113365910.77762
R346S1327510.03744552015.38264
N354K1261520.199317221.54701
A348S1229530.46166232.31622
Y449S121254-0.81127728565.3822
V382L1185550.035545921.54703
F490L1055560.5139503325.38180
L452M1053570.59663575.38445
S494L1030580.02634763829.23148
T376I998590.133825775.38444
A344S976600.160521532.31630
A352S960610.257613164.62505
S477R940620.082035600.0850
K356R850630.041244443.08614
G476S826640.1566225107.69392
A419S751650.41477843.08613
N450K704660.353594107.69389
E471Q696670.52304821.54705
D427V684680.129426210.77744
P384S672690.11512882720.77210
T470N65770-0.0310568107.69385
P463S604710.114429043.08612
T470I595720.020848521.54708
P479L592730.200917021.54709
R346I581740.07633701511.54327
S514F580750.35199521.54710
Y508H566760.75621953.85536
K444N564770.10243101713.08293
F338L545780.023947953.85534
E516Q525790.060840010.77753
Q414H52580-0.068162521.54684
T478I515810.126926921.54680
N354T505820.168020632.31626
A522P504830.090133921.54671
V362F494840.108230010.77790
K444R493850.2006171107.69403
T385N490860.004951664.62490
S477G48287-0.023455664.62492
S373L472880.022048400.0835
I434V451890.128626375.38467
N460S400900.155822696.92413
P499R389910.04404371310.0355
Y453F383920.52254943.08605
V503F362930.163921232.31628
N370S35994-0.056960743.08601
Q493E35995-0.03465734030.77138
D427G35396-0.043358343.08599
V433I344970.15712211813.85278
T478R32998-0.010054110.77785
R403K327990.17781924232.31131
Y449H318100-0.48817452116.15259
V503I3071010.130326000.0825
T345S305102-0.078763875.38475
A475S303103-0.07326343325.38182
V483I2831040.67022510.77780
V401L2791050.7544204131.54133
N501S2721060.16722072620.0218
F456L269107-0.08226408968.4616
A435S2671080.139025186.15432
V367I2641090.031746800.0830
L335F2621100.060440200.0831
G339S2611110.055940910.77739
S459Y2551120.52344700.0833
R346G253113-0.04625911612.31312
K458N2451140.003252386.15442
D427Y2431150.173219821.54672
T430I2431160.068438443.08594
I410V2351170.7105222720.77211
V483A2321180.6695261713.08291
L517F2311190.243214100.0828
A372V230120-0.047959310.77792
I468V2241210.040944564.62511
S359N2211220.061539832.31629
S349P2191230.08883425743.8589
S514T2141240.171120421.54676
T415N2131250.037445310.77747
V367A212126-0.065462000.0846
A352V2111270.084834943.08592
N354D2091280.1248273107.69388
P479R201129-0.046159021.54675
A520V1991300.099531500.0804
V407I1981310.23531471813.85288
Y449N198132-0.54207504030.77140
Q474H1961330.079936021.54674
K417R1961340.01055073526.92170
E406Q1951350.17172021713.08303
E340K192136-0.004853521.54673
A348T1871370.46336032.31625
S359T1831380.024347710.77745
P426S1801390.121227864.62503
P521S1751400.106930321.54707
F464L1741410.037845296.92415
N354S1681420.145524464.62512
F486L1671430.14562435240.0100
R408G157144-0.01415485743.8588
K378N1551450.05734072519.23228
V445A1531460.096132386.15435
A344T1531470.120128132.31624
E484G1491480.03984473526.92168
V445F1421490.253013332.31623
N481K1401500.108429910.77748
S359R1401510.065839100.0817
V445I1381520.327310700.0847
P337L1381530.037445443.08575
L441R137154-0.028856586.15430
S371T1371550.080235921.54736
P499S136156-0.08746441410.77337
N440Y1361570.184218543.08585
I402V1301580.4131802317.69242
P337S1301590.103930843.08580
D427H126160-0.037557610.77786
K356N124161-0.148467796.92418
E484D1241620.17272004131.54135
G504S1241630.03014721310.0341
F490V1241640.6497284030.77137
R408K1231650.04914201410.77333
L513F1231660.038645100.0821
G446R1211670.329510575.38447
K444M1201680.424375129.23360
E340D1191690.016249843.08570
G413R1171700.156722453.85529
V401I1161710.28911166247.6973
A411V1161720.444067129.23369
V341I1131730.063039610.77752
E484V109174-0.36047292116.15258
G485S1081750.1359255107.69397
Q493L1081760.22791495240.0102
D405Y1081770.123127664.62479
P491S1071780.399284107.69394
G485V105179-0.05706082216.92249
D428E105180-0.040157932.31617
L518I1031810.005651443.08582
R346T1021820.05304141713.08301
Q493K1021830.4321712620.0222
G482V1011840.070737875.38473
V483L981850.47295832.31616
P499L98186-0.038757775.38466
N394S981870.053041521.54726
L441F971880.063239510.77755
E471G971890.045043264.62510
E516A96190-0.048159553.85523
D427A91191-0.084464110.77759
T376N901920.0640394118.46370
E340A89193-0.063461453.85521
N354H891940.091233400.0845
P479H88195-0.000653110.77763
L517I881960.036645600.0844
A363V851970.188418232.31627
I434M851980.183218875.38465
K356E831990.050841775.38460
S359G822000.079636153.85526
A372P822010.13842531612.31310
K458R822020.092833096.92407
E465D812030.42857243.08590
D428G81204-0.043058264.62498
N460Y812050.168320596.92416
T376S81206-0.026956296.92411
N370K812070.096132421.54730
A397V792080.099331621.54731
T333I782090.059740300.0814
L390F772100.044243600.0799
P507S77211-0.10476587860.042
A344V76212-0.040258010.77789
F374L75213-0.176268975.38456
G482S752140.284511732.31620
Y451H752150.1492238129.23357
F490Y732160.414679118.46375
Q493H732170.23851452317.69243
N450D722180.21051621813.85282
G485A722190.0300474118.46380
G485R702200.06723893930.0145
N501I682210.3833882922.31200
N460I682220.19071801310.0342
G485D682230.24401392418.46232
P337T682240.012950243.08589
E340V67225-0.131766753.85524
I358V67226-0.096865032.31632
G413V662270.137325453.85518
G504D652280.11032964333.08125
Q414L64229-0.059361175.38470
S494A642300.17291992620.0221
I472V63231-0.126566432.31635
L368I632320.120528032.31666
P521L622330.087734521.54735
H519Y622340.023348121.54734
F486I622350.26971254333.08124
P499H612360.14702391310.0345
T500S59237-0.136367386.15431
A411T592380.27091241310.0350
L441I59239-0.023955821.54733
K356Q59240-0.063761653.85522
A348V582410.268012796.92423
N448S58242-0.5125747129.23363
K378R582430.08813441914.62274
E465G572440.274712064.62481
D405G562450.4687592015.38262
N388D562460.249913643.08581
N460D562470.03004732821.54207
N440T552480.279111932.31656
T415A55249-0.014254900.0811
H519L55250-0.067862432.31667
E471D542510.43966921.54732
I468T542520.072737464.62483
G482D532530.34019853.85520
V511I532540.118728564.62496
S477T51255-0.053960110.77791
H519Q51256-0.004153400.0816
G446D512570.04014461511.54323
E406D502580.31141121310.0348
Y351F492590.42167643.08572
T523I492600.035745821.54729
N481S492610.086234821.54728
G447V48262-0.56077531713.08295
K378M472630.18511842116.15257
G446A46264-0.067262375.38459
P521R462650.082735400.0801
Y421F462660.93958129.23358
V362L452670.096432110.77768
F342L45268-0.279571586.15433
A419T452690.2388144118.46372
A475T442700.05134162015.38261
K444T442710.5999341310.0349
A520T432720.134025610.77769
S469A432730.083935110.77770
I418V432740.4258733627.69165
G413W432750.15822201511.54328
N370H432760.018749210.77751
G339V432770.033246421.54727
S514Y432780.226915164.62484
I472T432790.06463931813.85283
N440I422800.36758932.31653
V512I422810.7336211511.54320
Y489H41282-0.12876656751.5469
N501H412830.7617181310.0346
S375A40284-0.024055953.85519
S375Y402850.078636432.31637
D389G402860.041744210.77760
G476A40287-0.0986653129.23361
N334K40288-0.022055500.0848
G496V38289-0.21497044232.31129
T523N382900.016949732.31640
P499T372910.049441875.38463
S494T372920.07383731612.31315
E471V372930.194917521.54725
Q498H362940.22711501310.0344
T478A36295-0.078863932.31642
T430S362960.100531443.08595
V503A362970.081935775.38469
A520P352980.1752195118.46381
T415S352990.132425853.85527
A372S35300-0.070562810.77743
G381R343010.1070302118.46376
D420N34302-0.011954564.62514
E340G34303-0.099265464.62495
N481D343040.067438821.54724
S359I333050.079236243.08577
Y473F333060.52994686.15429
A435T333070.193317975.38453
I434T333080.33701002821.54208
G482R323090.33889932.31646
V510I323100.0914332107.69396
Y369H323110.004751896.92419
N448D323120.4244743728.46155
D428Y323130.202516921.54737
N460K313140.274112110.77740
T393I313150.115628732.31648
G339C313160.084835021.54723
R466I313170.132425953.85525
V510L303180.043144086.15427
S375P303190.0206487129.23365
G476D30320-0.17396881410.77334
V362I303210.114828910.77750
K462I303220.208616464.62494
K462Q303230.214515543.08602
S371A29324-0.149167921.54722
Y473H293250.05924051511.54322
G504V29326-0.63667612216.92250
Y396F293270.068338532.31651
P479A293280.55594121.54721
Y380F283290.092133132.31654
S373A28330-0.169768610.77771
L492V283310.8225141713.08296
E516K283320.110329721.54720
V395F283330.111329353.85535
F464S28334-0.05386006953.0859
P337H283350.074137253.85567
Y449D28336-1.02267859170.015
T470A27337-0.063661575.38455
K417M273380.00005293325.38181
F377L27339-0.01715512015.38265
E471A273400.077736621.54719
T523A26341-0.011154200.0837
F456V26342-0.34557256247.6977
K356M263430.017049675.38448
L335V26344-0.033157121.54718
A352T263450.154422886.15434
D389E263460.060740100.0824
F486S263470.5575405441.5493
P384H263480.20821662216.92247
G447S25349-0.6370762107.69404
F490I253500.4078823930.0144
V503L253510.48815710.77788
N448T24352-0.0081539107.69405
N334Y243530.110829410.77774
L513I243540.012950353.85563
Y369C233550.01774942317.69240
S443A233560.34179632.31645
Y351H233570.069938053.85564
P384A233580.09773181511.54331
N394D233590.044443564.62478
S375T233600.039244953.85566
L517H233610.076736832.31644
A522T223620.116828610.77784
E340Q22363-0.064561743.08583
P521T223640.087634610.77787
A419V223650.5806361914.62275
N481I22366-0.062761321.54717
K458E223670.21081601713.08297
Q493P213680.044443411890.777
H519P213690.064739243.08579
D389N21370-0.015555000.0829
D442V21371-0.35977282519.23230
N440D213720.319811164.62497
N370D21373-0.025256053.85565
S371Y213740.251613400.0834
Y369F203750.068638221.54716
G413E20376-0.05416021813.85284
Q474E203770.36599086.15441
L335S203780.023948032.31665
N481Y203790.035146010.77772
S443F20380-0.92407796650.7770
D442Y20381-1.11237915038.46107
V511L19382-0.0553605107.69386
Y396H19383-0.033357221.54738
A372T19384-0.059761200.0839
W436L19385-0.26177131612.31316
N354Y193860.104230743.08569
R408T19387-0.05716094836.92109
D405E193880.2476137118.46379
A348E183890.5401451410.77336
R457S183900.32811065240.0103
A397S183910.048342396.92414
C361S183920.069238164.62504
I472L18393-0.048559643.08588
R403I18394-0.63447607154.6255
D427E17395-0.069262710.77764
L455S17396-0.21007013930.0142
D420Y173970.5024542116.15255
Q474R173980.033146553.85561
H519D16399-0.031857053.85562
P521Q164000.090833510.77756
I472F164010.5490431813.85285
K417E164020.01155054333.08122
S366F164030.224215343.08611
V395I154040.057340600.0803
N334S15405-0.100665632.31661
N394H154060.145424521.54715
T415I154070.006451243.08610
A363S154080.017249521.54713
T500A15409-0.187769564.62517
V503G15410-0.05576062317.69238
P463L15411-0.119766343.08608
W436C15412-0.13386701310.0339
G404C15413-0.20797004030.77139
W353C15414-0.32897234131.54134
G447C14415-0.89927784534.62112
H519R14416-0.011754400.0802
T470S144170.024347886.15425
R466K144180.156822286.15438
N501K14419-1.64798042015.38263
N460T144200.000752743.08604
S443C14421-0.60797583426.15176
F342I14422-0.18586933023.08188
L461I144230.3095114107.69395
I402L144240.15012343728.46157
L518V144250.010550843.08596
Q498K14426-2.222282275.38471
K462R144270.120727932.31631
L518P134280.03954481511.54330
G404S13429-0.09996551612.31319
N360K134300.049241900.0808
N360Y134310.023148210.77781
L441P134320.15852183728.46156
P384R134330.14632411813.85287
K458T134340.0811358107.69393
D428A13435-0.047359253.85545
T333K134360.175219600.0796
T385A12437-0.093464953.85559
A344D12438-0.019255443.08573
A352D124390.19461763728.46158
P337R124400.034946132.31657
T333A12441-0.025556100.0849
Y508C124420.907493224.62183
Y505F124430.17162031410.77335
S438A124440.029547500.0851
T478P12445-0.0308567118.46377
E465A124460.273012232.31664
S459P114470.09493262216.92248
I434L114480.150823321.54679
Y453H114490.362492107.69383
D428H11450-0.005853610.77783
D364N11451-0.186269400.0832
V524I114520.048642210.77775
V395A114530.001952521.54681
P507A114540.33061042620.0216
N394I114550.097631932.31643
E471K114560.202716875.38458
W353L11457-1.38197994534.62113
R357I114580.097232053.85531
F392S114590.00395211511.54329
A363P104600.18291891310.0343
D420G104610.4079814433.85120
D420A104620.4484651612.31314
A520E104630.165621032.31634
C379G10464-2.72468378565.3823
A348P104650.62863010.77778
G496R10466-1.30527973627.69166
D389A10467-0.075963710.77779
K462T104680.334410253.85532
V350A104690.5792379774.6212
Y505C10470-2.15478187860.040
S469L10471-0.115566221.54678
R457K104720.965462418.46234
S349A10473-0.115466143.08597
F338Y10474-0.0443585129.23359
V350I104751.210511612.31305
C379F104760.28341182317.69244
V503D104770.36509196.92412
G504C10478-0.13106663728.46153
K356T104790.091333375.38464
Y449F9480-0.38667321310.0340
G502D9481-3.12428473526.92172
N394T94820.035945732.31636
E516G94830.053341386.15443
N448K9484-0.35767272216.92246
D389H94850.046842600.0827
V483G94860.32401102821.54206
G476V9487-1.09207894534.62117
L513V9488-0.17046872317.69241
Q498L9489-0.83967761511.54321
D405H94900.183318796.92409
K424R94910.04624283123.85187
T500I9492-1.307979843.08598
L517V94930.015449900.0826
A352G94940.24581381310.0347
N394Y94950.163921364.62488
K462E94960.214315675.38474
P384T94970.15142311914.62271
G413A84980.044743321.54677
A397T84990.059440464.62485
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A411D26780.4007833728.46154
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T333S2697-0.044058400.0805
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I434K2700-0.927978011487.699
C379R2701-2.38778297456.9248
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R355S2703-0.16866852015.38267
V382G2704-0.08736432620.0226
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D420V27130.9813496.92406
I410M27140.4619614131.54132
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V401A27170.26071292620.0225
F392L27180.005451543.08586
G482A27190.119028243.08587
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F342Y2722-0.39647352216.92245
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E465V27320.840013107.69401
P507Q2733-3.24398498464.6226
F464Y27340.0003528118.46373
K458M27350.309811364.62480
N460H27360.213215700.0797
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R509G1746-2.82088408565.3824
T333R17470.156722300.0813
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D442H1803-0.995778410580.7710
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T393P18380.153023075.38449
F392I18390.043343964.62509
C391F18400.188618153.85558
C391S18410.068638343.08593
S469T18420.175619410.77776
I472N1843-0.32187212015.38266
I472S1844-0.55917522418.46233
I472M18450.193317864.62487
S383P18460.12762661813.85286
V382A1847-0.1325669118.46382
G381A18480.031846786.15424
C379Y18490.05534112620.0219
A475G18500.17371974534.62114
K378T18510.09793172116.15256
K378Q18520.07923631914.62277
G526R18530.166820853.85528

* BFE change: Binding free energy change for the S protein and human ACE2 complex induced by a single-site S protein RBD mutation. A negative BFE change weakens the binding between S protein and ACE2, while a positive BFE change strengthens the binding between S protein and ACE2, giving rise to a more infectious variant [1].

♦ This column shows the number of antibody and S protein complexes disrupted by a specific mutation. We consider an antibody and S protein complex to be disrupted if its binding affinity is reduced by more than 0.3 kcal/mol.

♠ This column shows the ratio of disrupted antibody and S protein complexes out of 106 known complexes [2].