buildPPD Input

Example: 3ao4
file_upload Select file Change  
Minimum pocket depth required.
Minimum pocket area required.
Minimum pocket volume required.
This is optional. A message will be sent to your emal when your job is done.

extensionUser guide

This is a software to detect protein pockets with prescribed geometric features including depth, area and volume. It is an open source code and can be downloaded at Weilab on GitHub

Your result is a zip file including
  • Result.txt: the detected pocktets with geometric features and adjacent atoms.


1 Rundong Zhao, Zixuan Cang, Yiying Tong and Guo-Wei Wei, Protein Pocket Detection via Convex Hull Surface Evolution and Associated Reeb Graph (2018). View

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